diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 84 |
1 files changed, 29 insertions, 55 deletions
@@ -1,67 +1,41 @@ -# Maintainer: Clint Valentine <valentine.clint@gmail.com> +# Maintainer: Luis Martinez <luis dot martinez at disroot dot org> +# Contributor: Clint Valentine <valentine.clint@gmail.com> -_name=gffutils -pkgbase='python-gffutils' -pkgname=('python-gffutils' 'python2-gffutils') -pkgver=0.9 -pkgrel=3 +pkgname=python-gffutils +pkgver=0.10.1 +pkgrel=1 pkgdesc="GFF and GTF file manipulation and interconversion in Python" arch=('any') -url="https://pypi.python.org/pypi/gffutils" +url="https://github.com/daler/gffutils" license=('MIT') -makedepends=( - 'python' 'python-setuptools' - 'python2' 'python2-setuptools') -options=(!emptydirs) -source=("${pkgname}"-"${pkgver}".tar.gz::https://pypi.python.org/packages/b4/ea/54ca403a8d471849606fb432b9afcf73c8c5105ea2dd87b8d38bd5217c5a/gffutils-0.9.tar.gz) -sha256sums=('e1b0bf2b422ec3491be13d77bf7baf71d274abd844e8f8b6c1217a95b236218b') +depends=( + 'python-argcomplete' + 'python-argh' + 'python-pyfaidx' + 'python-simplejson' + 'python-six') +optdepends=( + 'bedtools: for genomic interval arithemtic' + 'python-biopython: for sequence manipulation' + 'python-pybedtools: wrapper for bedtools') +makedepends=('python-setuptools') +source=("$pkgname-$pkgver.tar.gz::$url/archive/v$pkgver.tar.gz" + '001-setup.py.patch') +sha256sums=('c020f38d572a38227d575ca6b4a6781e10317c4231c7008f533bb6d9167f64d8' + '8b8b8e89a6cf1cd74f73f5e5a67053a24bcc681182bc20c30716818fe9243c58') prepare() { - cp -a "${_name}"-"${pkgver}"{,-py2} + patch -p1 -d "gffutils-$pkgver" < 001-setup.py.patch + sed -i "s/@PKGVER@/$pkgver/" "gffutils-$pkgver/setup.py" } build(){ - cd "${srcdir}"/"${_name}"-"${pkgver}" - python setup.py build - - cd "${srcdir}"/"${_name}"-"${pkgver}"-py2 - python2 setup.py build -} - -package_python2-gffutils() { - depends=( - 'python2' - 'python2-argcomplete' - 'python2-argh' - 'python2-pyfaidx' - 'python2-simplejson' - 'python2-six') - optdepends=( - 'bedtools: for genomic interval arithemtic' - 'python2-biopython: for sequence manipulation' - 'python2-pybedtools: wrapper for bedtools') - - cd "${_name}"-"${pkgver}"-py2 - python2 setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build - install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/"${pkgname}"/LICENSE - - mv "${pkgdir}"/usr/bin/"${_name}"-cli "${pkgdir}"/usr/bin/"${_name}"-cli2 + cd "gffutils-$pkgver" + python setup.py build } -package_python-gffutils() { - depends=( - 'python' - 'python-argcomplete' - 'python-argh' - 'python-pyfaidx' - 'python-simplejson' - 'python-six') - optdepends=( - 'bedtools: for genomic interval arithemtic' - 'python-biopython: for sequence manipulation' - 'python-pybedtools: wrapper for bedtools') - - cd "${_name}"-"${pkgver}" - python setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build - install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/"${pkgname}"/LICENSE +package() { + cd "gffutils-$pkgver" + PYTHONHASHSEED=0 python setup.py install --root="$pkgdir/" --optimize=1 --skip-build + install -Dm644 LICENSE -t "$pkgdir/usr/share/licenses/$pkgname/" } |