1 files changed, 36 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD
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+# Maintainer: Clint Valentine <valentine.clint@gmail.com>
+
+pkgname='python-pybedtools'
+pkgver=0.7.10.r21.g7143a86
+pkgrel=1
+pkgdesc="Python wrapper for Aaron Quinlan's bedtools."
+arch=('any')
+url="http://daler.github.io/pybedtools"
+license=('GPL2')
+depends=(
+  'python'
+  'python-numpy'
+  'python-pandas'
+  'python-pysam>=0.8.1'
+  'python-six')
+makedepends=('cython' 'python-setuptools')
+optdepends=(
+  'bedtools: more-or-less required by namesake'
+  'htslib: for working with SAM/BAM/CRAM files'
+  'python-matplotlib: for plotting genomic intervals'
+  'ucsc-kent-genome-tools: for bedgraph to bigwig conversions')
+provides=('python-pybedtools')
+conflicts=('python-pybedtools')
+options=(!emptydirs)
+source=("git+https://github.com/daler/pybedtools.git")
+md5sums=('SKIP')
+
+pkgver() {
+  cd "pybedtools"
+  git describe --long | sed 's/\([^-]*-g\)/r\1/;s/-/./g' | sed s'/v//'
+}
+
+package() {
+  cd "${srcdir}/pybedtools"
+  python setup.py install --root="${pkgdir}/" --optimize=1
+}