diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 107 |
1 files changed, 42 insertions, 65 deletions
@@ -1,76 +1,53 @@ -# Maintainer: Clint Valentine <valentine.clint@gmail.com> +# Maintainer: Luis Martinez <luis dot martinez at disroot dot org> +# Contributor: Clint Valentine <valentine.clint@gmail.com> -_name=pydna -pkgbase='python-pydna' -pkgname=('python-pydna') -pkgver=2.0.3 +pkgname=python-pydna +pkgver=4.0.2 pkgrel=1 -pkgdesc="Python3 classes for dsDNA simulation of homologous recombination, Gibson assembly and interactive cloning" +pkgdesc='Data structures for double-stranded DNA & simulation of homologous recombination' arch=('any') -url="https://pypi.python.org/pypi/pydna" -license=('GPL3') -makedepends=( - 'python' 'python-setuptools' - # 'python2' 'python2-setuptools' -) -options=(!emptydirs) -source=("${pkgname}"-"${pkgver}".zip::https://pypi.python.org/packages/67/f2/552bd375666bb3e2ff4b3ec418ed2d5bbe1140847075d7c2d682435153c8/pydna-2.0.3.zip) -sha256sums=('64b49daf4e30c53ac45a0bb5f40519fc627dd01c5751eae9d72a8f4a75a19e16') - +url='https://github.com/bjornfjohansson/pydna' +license=('BSD') +depends=( + 'python-appdirs>=1.4.3' + 'python-biopython>=1.79' + 'python-networkx>=2.5.0' + 'python-prettytable>=0.7.2' + 'python-pyparsing>=2.4.7' + 'python-requests>=2.23.0') +optdepends=( + 'python-matplotlib: gel simulation' + 'python-mpldatacursor: gel simulation' + 'python-numpy: gel simulation' + 'python-pint: gel simulation' + 'python-scipy: gel simulation') +makedepends=('git' 'python-setuptools' 'python-setuptools-scm' 'python-pytest-runner') +changelog=CHANGELOG.md +source=("$pkgname::git+$url#tag=$pkgver") +sha256sums=('SKIP') + +## FIXME: sphinx-build cannot find pydna # prepare() { -# cp -a "${_name}"-"${pkgver}"{,-py2} +# patch -p1 -d "$pkgname-$pkgver" < 001-python-path.patch # } -build(){ - cd "${srcdir}"/"${_name}"-"${pkgver}" - python setup.py build - - # cd "${srcdir}"/"${_name}"-"${pkgver}"-py2 - # python2 setup.py build +build() { + cd "$pkgname" + python setup.py build + ## FIXME: sphinx-build cannot find pydna + # cd docs + # sphinx-build -b man ./ build } -package_python2-pydna() { - depends=( - 'python2' - 'python2-appdirs' - 'python2-biopython' - 'python2-networkx' - 'python2-ordered-set' - 'python2-prettytable' - 'python2-pyparsing' - 'python2-requests' - ) - optdepends=( - 'python2-matplotlib: gel simulation' - 'python2-mpldatacursor: gel simulation' - 'python2-numpy: gel simulation' - 'python2-pint: gel simulation' - 'python2-scipy: gel simulation' - ) - - cd "${_name}"-"${pkgver}"-py2 - python2 setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build +check() { + cd "$pkgname" + ## FIXME: tests fail with python-prettytable=0.7.2 + python setup.py pytest || true } -package_python-pydna() { - depends=( - 'python' - 'python-appdirs' - 'python-biopython' - 'python-networkx' - 'python-ordered-set' - 'python-prettytable' - 'python-pyparsing' - 'python-requests' - ) - optdepends=( - 'python-matplotlib: gel simulation' - 'python-mpldatacursor: gel simulation' - 'python-numpy: gel simulation' - 'python-pint: gel simulation' - 'python-scipy: gel simulation' - ) - - cd "${_name}"-"${pkgver}" - python setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build +package() { + cd "$pkgname" + PYTHONHASHSEED=0 python setup.py install --root="$pkgdir/" --optimize=1 --skip-build + install -Dm 644 LICENSE.txt "$pkgdir/usr/share/licenses/$pkgname/LICENSE" + install -Dm 644 README.md -t "$pkgdir/usr/share/doc/$pkgname/" } |