diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 38 |
1 files changed, 21 insertions, 17 deletions
@@ -1,29 +1,33 @@ -# Maintainer: Fabio Zanini <fabio.zanini _at_ stanford.edu> +# Maintainer: PumpkinCheshire <sollyonzou at gmail dot com> +# Contributor: Fabio Zanini <fabio.zanini _at_ stanford.edu> + pkgname='python-pysam' -pkgver=0.15.0 -pkgrel=2 +_name='pysam' +pkgver=0.16.0.1 +pkgrel=1 pkgdesc="Python interface for the SAM/BAM sequence alignment and mapping format" arch=('x86_64') url="https://github.com/pysam-developers/pysam" license=('MIT') -groups=() depends=('python') -makedepends=('python-setuptools' 'cython>=0.22') +makedepends=('python-setuptools' 'cython' 'htslib') provides=('python-pysam') -conflicts=() -replaces=() -backup=() options=(!emptydirs) install= -source=("https://github.com/pysam-developers/pysam/archive/v${pkgver}.tar.gz") -md5sums=('80b6cd208a601b06b3778d4af33ddb89') +source=("https://github.com/pysam-developers/${_name}/archive/v${pkgver}.tar.gz") +sha256sums=('a61e98e299fa93ba121aab521081282b61bc978bb9052d33b26b38f8fe15573e') -package() { - cd "$srcdir/pysam-$pkgver" - # Use following line instead to compile with the internal htslib - python setup.py install --root="$pkgdir/" --optimize=1 - # Use the following line to compile against external htslib from AUR (buggy) - #HTSLIB_LIBRARY_DIR=/usr/lib HTSLIB_INCLUDE_DIR=/usr/include python setup.py install --root="$pkgdir/" --optimize=1 +build() { + cd "$srcdir/$_name-$pkgver" + + export HTSLIB_LIBRARY_DIR=/usr/lib + export HTSLIB_INCLUDE_DIR=/usr/include + + python setup.py build } -# vim:set ts=2 sw=2 et: +package() { + cd "$srcdir/$_name-$pkgver" + python setup.py install --root="$pkgdir/" --optimize=1 --skip-build + install -Dm644 "$srcdir/$_name-$pkgver/COPYING" -t "$pkgdir/usr/share/licenses/$pkgname" +} |