diff options
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..e2b73cacd295 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,50 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=alabaster.matrix +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Load and Save Artifacts from File" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(MIT) +depends=( + r-alabaster.base + r-delayedarray + r-hdf5array + r-rhdf5 +) +checkdepends=( + r-chihaya + r-testthat +) +optdepends=( + r-biocgenerics + r-biocstyle + r-chihaya + r-knitr + r-s4vectors + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('4b93a993b0f4a9b3333da48a8f49ad36') +sha256sums=('637424bdb91f4f286cc1ed64405c5ef43c8ae96f849b038477536054344e1550') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} |