diff options
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 49 |
1 files changed, 49 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..b02adcf189b7 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,49 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=alabaster.vcf +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Save and Load Variant Data to/from File" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(MIT) +depends=( + r-alabaster.base + r-alabaster.se + r-alabaster.string + r-rsamtools + r-s4vectors + r-variantannotation +) +checkdepends=( + r-testthat +) +optdepends=( + r-biocstyle + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('a512241aa940a4dd220d86da0b94aea4') +sha256sums=('94b90cf7ecdf2a699e4e55a0a8a60da9ed5a85197ce7362eb0247df2f037255d') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} |