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Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 54 |
1 files changed, 54 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..08b0c550013b --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,54 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=ATACseqQC +_pkgver=1.20.2 +pkgname=r-${_pkgname,,} +pkgver=1.20.2 +pkgrel=1 +pkgdesc='ATAC-seq Quality Control' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biocgenerics + r-biostrings + r-bsgenome + r-chippeakanno + r-edger + r-genomeinfodb + r-genomicalignments + r-genomicranges + r-genomicscores + r-iranges + r-limma + r-motifstack + r-preseqr + r-randomforest + r-rsamtools + r-rtracklayer + r-s4vectors +) +optdepends=( + r-biocstyle + r-bsgenome.hsapiens.ucsc.hg19 + r-knitr + r-motifdb + r-phastcons100way.ucsc.hg19 + r-rmarkdown + r-testthat + r-trackviewer + r-txdb.hsapiens.ucsc.hg19.knowngene +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('17cf6c17610c287a187010f30b880ae57e5e9f9ef42b3d018fec01c92ab0474a') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |