diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..fc121e322ba4 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,50 @@ +# system requirements: Cytoscape (>= 3.6.1) (if used for visualization ofresults, heavily suggested) +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=categoryCompare +_pkgver=1.40.0 +pkgname=r-${_pkgname,,} +pkgver=1.40.0 +pkgrel=1 +pkgdesc='Meta-analysis of high-throughput experiments using feature annotations' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-annotate + r-annotationdbi + r-biobase + r-biocgenerics + r-category + r-colorspace + r-gostats + r-graph + r-gseabase + r-hwriter + r-rcy3 +) +optdepends=( + r-affy + r-estrogen + r-genefilter + r-go.db + r-hgu95av2.db + r-keggrest + r-knitr + r-limma + r-org.hs.eg.db + r-rmarkdown +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('4753b13f13a3ca48248d3cf9750813efc6ff3c5aabbd03b809cfc9794a7a2dae') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |