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-rw-r--r--PKGBUILD33
1 files changed, 21 insertions, 12 deletions
diff --git a/PKGBUILD b/PKGBUILD
index 0ef739e4e273..84426df668e3 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,41 +1,50 @@
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=celldex
-_pkgver=1.12.0
+_pkgver=1.14.0
pkgname=r-${_pkgname,,}
-pkgver=1.12.0
+pkgver=${_pkgver//-/.}
pkgrel=1
-pkgdesc='Reference Index for Cell Types'
-arch=('any')
-url="https://bioconductor.org/packages/${_pkgname}"
-license=('GPL')
+pkgdesc="Index of Reference Cell Type Datasets"
+arch=(any)
+url="https://bioconductor.org/packages/$_pkgname"
+license=('GPL-3.0-only')
depends=(
- r
+ r-alabaster.base
+ r-alabaster.matrix
+ r-alabaster.se
r-annotationdbi
r-annotationhub
+ r-dbi
r-delayedarray
r-delayedmatrixstats
r-experimenthub
+ r-gypsum
+ r-jsonlite
+ r-rsqlite
r-s4vectors
r-summarizedexperiment
)
optdepends=(
+ r-biocmanager
r-biocstyle
r-dt
r-ensembldb
+ r-jsonvalidate
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/data/experiment/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('94db251d15b86c1ff26be9a285640811cfb1abda6d7819b96e3cbcc4636d72b2')
+md5sums=('184b9a4161cbccf6cbd33ab6d38d2c74')
+b2sums=('46d80d3bb1695a0eb4babf4eb86218e65e32e09f3cd377b68696ede31675313edd685c9edac648b612ace266cda89cf8fbbf1af2455aa61edce3213799404001')
build() {
- R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+ mkdir build
+ R CMD INSTALL -l build "$_pkgname"
}
package() {
- install -dm0755 "${pkgdir}/usr/lib/R/library"
- cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+ install -d "$pkgdir/usr/lib/R/library"
+ cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
-# vim:set ts=2 sw=2 et: