diff options
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 60 |
1 files changed, 60 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..af972511fd79 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,60 @@ +# system requirements: C++11 +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=chromVAR +_pkgver=1.18.0 +pkgname=r-${_pkgname,,} +pkgver=1.18.0 +pkgrel=1 +pkgdesc='Chromatin Variation Across Regions' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('MIT') +depends=( + r + r-biocgenerics + r-biocparallel + r-biostrings + r-bsgenome + r-dt + r-genomeinfodb + r-genomicranges + r-ggplot2 + r-iranges + r-miniui + r-nabor + r-plotly + r-rcolorbrewer + r-rcpp + r-rcpparmadillo + r-rsamtools + r-rtsne + r-s4vectors + r-shiny + r-summarizedexperiment + r-tfbstools + gcc +) +optdepends=( + r-bsgenome.hsapiens.ucsc.hg19 + r-jaspar2016 + r-knitr + r-motifmatchr + r-pheatmap + r-readr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('d514d3a0da41b71daabe7c273ec38fd52577caf46a0427000096ee49eadc1a6e') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |