diff options
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 57 |
1 files changed, 57 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..c38a52fbf79b --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,57 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=compcodeR +_pkgver=1.32.0 +pkgname=r-${_pkgname,,} +pkgver=1.32.0 +pkgrel=1 +pkgdesc='RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-catools + r-edger + r-ggplot2 + r-gplots + r-gtools + r-knitr + r-limma + r-markdown + r-modeest + r-rocr + r-sm + r-stringr + r-vioplot + tk + r-matrixstats + r-ape + r-phylolm +) +optdepends=( + r-bayseq + r-biocstyle + r-deseq2 + r-dss + r-ebseq + r-genefilter + r-nbpseq + r-noiseq + r-rmarkdown + r-rpanel + r-tcc + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('f18f53a5ad354307bd015314d63dd2567637d05af60b26457ed6c445d58f12f6') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |