diff options
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 55 |
1 files changed, 55 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..f6237dc4637e --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,55 @@ +# system requirements: C++11, GNU make +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=csaw +_pkgver=1.30.1 +pkgname=r-${_pkgname,,} +pkgver=1.30.1 +pkgrel=3 +pkgdesc='ChIP-Seq Analysis with Windows' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biocgenerics + r-biocparallel + r-edger + r-genomeinfodb + r-genomicranges + r-iranges + r-limma + r-metapod + r-rcpp + r-rhtslib + r-rsamtools + r-s4vectors + r-summarizedexperiment + r-zlibbioc + gcc + make +) +optdepends=( + r-annotationdbi + r-biocmanager + r-biocstyle + r-genomicalignments + r-genomicfeatures + r-knitr + r-org.mm.eg.db + r-rmarkdown + r-testthat + r-txdb.mmusculus.ucsc.mm10.knowngene +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('a38512cc4db8865a70623d60db29e4d4f05c476c6a0de776110cbc50c4cbde89') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |