diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 37 |
1 files changed, 24 insertions, 13 deletions
@@ -1,19 +1,30 @@ +# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com # Contributor: Grey Christoforo <first name at last name dot net> -pkgname=r-delayedarray -_bc_name=DelayedArray -pkgver=0.12.0 + +_bcname=DelayedArray +_bcver=0.12.2 +pkgname=r-${_bcname,,} +pkgver=${_bcver//[:-]/.} pkgrel=1 -pkgdesc="Delayed operations on array-like objects" -url="https://bioconductor.org/packages/release/bioc/html/${_bc_name}.html" -arch=("x86_64") -license=('Artistic-2.0') -depends=('r' 'r-iranges' 'r-biocgenerics' 'r-s4vectors' 'r-biocparallel' 'r-matrixstats') -source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bc_name}_${pkgver}.tar.gz") -sha1sums=('53a087be70db65f2775f319b8d71e4489e0a52cf') +pkgdesc="A unified framework for working transparently with on-disk and in-memory array-like datasets" +arch=(i686 x86_64) +url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html" +license=(Artistic-2.0) +depends=('r>=3.4' r-matrixstats 'r-biocgenerics>=0.31.5' 'r-s4vectors>=0.21.7' 'r-iranges>=2.17.3' r-biocparallel) +makedepends=(gcc) +optdepends=(r-hdf5array r-genefilter r-summarizedexperiment r-airway r-pryr r-delayedmatrixstats r-knitr r-biocstyle r-runit) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz") +md5sums=('6b6e04ad5b10d6319767d5841e1bcb47') + +build() { + cd "${srcdir}" + + R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l ${srcdir} +} package() { - mkdir -p $pkgdir/usr/lib/R/library - cd $srcdir + cd "${srcdir}" - R CMD INSTALL -l $pkgdir/usr/lib/R/library ./${_bc_name} + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library" } |