1 files changed, 57 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..cd3b83c22824
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,57 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=derfinder
+_pkgver=1.30.0
+pkgname=r-${_pkgname,,}
+pkgver=1.30.0
+pkgrel=1
+pkgdesc='Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-annotationdbi
+  r-biocgenerics
+  r-biocparallel
+  r-bumphunter
+  r-derfinderhelper
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicfeatures
+  r-genomicfiles
+  r-genomicranges
+  r-hmisc
+  r-iranges
+  r-qvalue
+  r-rsamtools
+  r-rtracklayer
+  r-s4vectors
+)
+optdepends=(
+  r-biocstyle
+  r-covr
+  r-derfinderdata
+  r-derfinderplot
+  r-deseq2
+  r-ggplot2
+  r-knitr
+  r-limma
+  r-refmanager
+  r-rmarkdown
+  r-sessioninfo
+  r-testthat
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('3b9f4aea71f556219d262b216dcd5d7d38f5b0d4c09de9b466baa269c477d9ff')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: