diff options
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 61 |
1 files changed, 61 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..0285d1941a3c --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,61 @@ +# system requirements: To generate html reports pandoc(http://pandoc.org/installing.html) is required. +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=DiscoRhythm +_pkgver=1.12.0 +pkgname=r-${_pkgname,,} +pkgver=1.12.0 +pkgrel=1 +pkgdesc='Interactive Workflow for Discovering Rhythmicity in Biological Data' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biocgenerics + r-biocstyle + r-broom + r-data.table + r-dplyr + r-dt + r-ggextra + r-ggplot2 + r-gridextra + r-heatmaply + r-kableextra + r-knitr + r-magick + r-matrixstats + r-matrixtests + r-metacycle + r-plotly + r-reshape2 + r-rmarkdown + r-s4vectors + r-shiny + r-shinybs + r-shinycssloaders + r-shinydashboard + r-shinyjs + r-summarizedexperiment + r-upsetr + r-venndiagram + r-viridis + r-zip + pandoc +) +optdepends=( + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('bb2a9967cde8ccb29777600347bbc763ea15e0b184fc613db7bd4eca4a28a3d1') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |