diff options
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 54 |
1 files changed, 54 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..5b236ca1e196 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,54 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=enhancerHomologSearch +_pkgver=1.2.0 +pkgname=r-${_pkgname,,} +pkgver=1.2.0 +pkgrel=1 +pkgdesc='Identification of putative mammalian orthologs to given enhancer' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biocfilecache + r-biocgenerics + r-biocparallel + r-biostrings + r-bsgenome + r-genomeinfodb + r-genomicranges + r-httr + r-iranges + r-jsonlite + r-motifmatchr + r-rcpp + r-rtracklayer + r-s4vectors +) +optdepends=( + r-bsgenome.drerio.ucsc.danrer10 + r-bsgenome.hsapiens.ucsc.hg38 + r-bsgenome.mmusculus.ucsc.mm10 + r-knitr + r-motifdb + r-org.hs.eg.db + r-org.mm.eg.db + r-rmarkdown + r-testthat + r-tfbstools + r-txdb.hsapiens.ucsc.hg38.knowngene + r-txdb.mmusculus.ucsc.mm10.knowngene +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('b7b750fb2d68cab41fdff4491bb1a7e71273bbf4cb1de738f3d80591d4679e1b') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |