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Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 52 |
1 files changed, 52 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..e4a73ee41b8e --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,52 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=FlowSOM +_pkgver=2.4.0 +pkgname=r-${_pkgname,,} +pkgver=2.4.0 +pkgrel=1 +pkgdesc='Using self-organizing maps for visualization and interpretation of cytometry data' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biocgenerics + r-colorramps + r-consensusclusterplus + r-cytoml + r-dplyr + r-flowcore + r-flowworkspace + r-ggforce + r-ggnewscale + r-ggplot2 + r-ggpointdensity + r-ggpubr + r-ggrepel + r-igraph + r-magrittr + r-pheatmap + r-rcolorbrewer + r-rlang + r-rtsne + r-scattermore + r-tidyr + r-xml +) +optdepends=( + r-biocstyle + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('8518c515dfefcf9ba970a6e99815cc2af9809b1d5bb6aa300b28d55a74d3542d') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |