summarylogtreecommitdiffstats
path: root/PKGBUILD
diff options
context:
space:
mode:
Diffstat (limited to 'PKGBUILD')
-rw-r--r--PKGBUILD52
1 files changed, 52 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..e4a73ee41b8e
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,52 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=FlowSOM
+_pkgver=2.4.0
+pkgname=r-${_pkgname,,}
+pkgver=2.4.0
+pkgrel=1
+pkgdesc='Using self-organizing maps for visualization and interpretation of cytometry data'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+ r
+ r-biocgenerics
+ r-colorramps
+ r-consensusclusterplus
+ r-cytoml
+ r-dplyr
+ r-flowcore
+ r-flowworkspace
+ r-ggforce
+ r-ggnewscale
+ r-ggplot2
+ r-ggpointdensity
+ r-ggpubr
+ r-ggrepel
+ r-igraph
+ r-magrittr
+ r-pheatmap
+ r-rcolorbrewer
+ r-rlang
+ r-rtsne
+ r-scattermore
+ r-tidyr
+ r-xml
+)
+optdepends=(
+ r-biocstyle
+ r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('8518c515dfefcf9ba970a6e99815cc2af9809b1d5bb6aa300b28d55a74d3542d')
+
+build() {
+ R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+ install -dm0755 "${pkgdir}/usr/lib/R/library"
+ cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: