diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..da4c83303176 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,43 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=gage +_pkgver=2.46.0 +pkgname=r-${_pkgname,,} +pkgver=2.46.0 +pkgrel=1 +pkgdesc='Generally Applicable Gene-set Enrichment for Pathway Analysis' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-annotationdbi + r-go.db + r-graph + r-keggrest +) +optdepends=( + r-deseq2 + r-edger + r-gagedata + r-genomicalignments + r-gseabase + r-hgu133a.db + r-limma + r-org.hs.eg.db + r-pathview + r-rsamtools + r-txdb.hsapiens.ucsc.hg19.knowngene +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('ebc09e31e6d0bc1b428e2830727322db79bcc5d3692347e55d19a304110a1d0e') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |