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Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 49 |
1 files changed, 49 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..eb024260be09 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,49 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=GDCRNATools +_pkgver=1.16.2 +pkgname=r-${_pkgname,,} +pkgver=1.16.2 +pkgrel=3 +pkgdesc='GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDC' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('Artistic2.0') +depends=( + r + r-biocparallel + r-biomart + r-clusterprofiler + r-deseq2 + r-dose + r-dt + r-edger + r-genomicdatacommons + r-ggplot2 + r-gplots + r-jsonlite + r-limma + r-org.hs.eg.db + r-pathview + r-rjson + r-shiny + r-survminer + r-xml +) +optdepends=( + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('5cfd83bf34be20b80cc02061880290c35c81c72edd03226c25423ad4c56021ff') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |