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Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 57 |
1 files changed, 57 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..32ed942d9a9e --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,57 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=GENESIS +_pkgver=2.26.0 +pkgname=r-${_pkgname,,} +pkgver=2.26.0 +pkgrel=1 +pkgdesc='GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biobase + r-biocgenerics + r-biocparallel + r-data.table + r-gdsfmt + r-genomicranges + r-gwastools + r-igraph + r-iranges + r-reshape2 + r-s4vectors + r-seqarray + r-seqvartools + r-snprelate +) +optdepends=( + r-biocstyle + r-compoissonreg + r-compquadform + r-dplyr + r-ggally + r-ggplot2 + r-gwasdata + r-knitr + r-poibin + r-rcolorbrewer + r-rmarkdown + r-spatest + r-survey + r-testthat + r-txdb.hsapiens.ucsc.hg19.knowngene +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('2c517d2e008cd2d4fbb5b19c7ed0e58b33b5fb3a8fa7aec108dd6f9aa4e9c3e2') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |