diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 34 |
1 files changed, 25 insertions, 9 deletions
@@ -6,11 +6,12 @@ _bcname=GenomeInfoDb _bcver=1.36.0 pkgname="r-${_bcname,,}" pkgver="${_bcver//[:-]/.}" -pkgrel=1 +pkgrel=2 pkgdesc="Utilities for manipulating chromosome names, including modifying them to follow a particular naming style" arch=("any") url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html" license=("Artistic2.0") + depends=( "r>=4.0.0" "r-biocgenerics>=0.37.0" @@ -33,10 +34,25 @@ optdepends=( "r-biocstyle" "r-knitr" ) -checkdepends=( - "${optdepends[@]}" - "r-rcmdcheck" -) + +# The unittests for `r-pkgcache` have circular +# dependency chains. + +# As such, the tests can not be run on first build. +# While R packages from CRAN, generally, are well-tested +# before they are released, in some situations, you want to +# have thorough testing on your own end. + +# To run the tests, first build this package without `check()` +# (i.e., as-is) to bootstrap `r-pkgcache`. Then, on subsequent builds, +# (assumining you have a local repository that is accessible from +# the build chroot), uncomment the lines defining `checkdepends`, below, +# as well as the `check()` function further down + +# checkdepends=( +# "${optdepends[@]}" +# "r-rcmdcheck" +# ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz") b2sums=("2bd7ed553f7a2bbe37f71d4eee98152907f47f206f657fbdbfc192d385671715be397407e3a3feb827ec73f2f1e52ce1beac68a0460de0224ed3b3c1368eddd5") @@ -46,10 +62,10 @@ build() { R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}/build/" } -check() { - cd "${srcdir}/${_bcname}/" - R_LIBS="${srcdir}/build/" R CMD check --no-manual --no-multiarch --no-vignettes . -} +# check() { +# cd "${srcdir}/${_bcname}/" +# R_LIBS="${srcdir}/build/" R CMD check --no-manual --no-multiarch --no-vignettes . +# } package() { install -dm0755 "${pkgdir}/usr/lib/R/library" |