diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 57 |
1 files changed, 52 insertions, 5 deletions
@@ -1,8 +1,9 @@ +# Maintainer: peippo <christoph+aur@christophfink.com> # Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com # Contributor: Grey Christoforo <first name at last name dot net> _bcname=GenomicRanges -_bcver=1.46.1 +_bcver=1.48.0 pkgname=r-${_bcname,,} pkgver=${_bcver//[:-]/.} pkgrel=1 @@ -10,10 +11,53 @@ pkgdesc="Representation and manipulation of genomic intervals" arch=(i686 x86_64) url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html" license=(Artistic-2.0) -depends=('r>=4.0.0' 'r-biocgenerics>=0.37.0' 'r-s4vectors>=0.27.12' 'r-iranges>=2.23.9' 'r-genomeinfodb>=1.15.2' 'r-xvector>=0.29.2') -optdepends=(r-biobase r-annotationdbi r-annotate r-biostrings r-summarizedexperiment r-rsamtools r-genomicalignments r-rtracklayer r-bsgenome r-genomicfeatures r-gviz r-variantannotation r-annotationhub r-deseq2 r-dexseq r-edger r-kegggraph r-rnaseqdata.hnrnpc.bam.chr14 r-pasillabamsubset r-keggrest r-hgu95av2.db r-hgu95av2probe r-bsgenome.scerevisiae.ucsc.saccer2 r-bsgenome.hsapiens.ucsc.hg19 bsgenome.mmusculus.ucsc.mm10 r-txdb.athaliana.biomart.plantsmart22 txdb.dmelanogaster.ucsc.dm3.ensgene r-txdb.hsapiens.ucsc.hg19.knowngene r-txdb.mmusculus.ucsc.mm10.knowngene r-runit r-digest r-knitr r-rmarkdown r-biocstyle) +depends=( + "r>=4.0.0" + "r-biocgenerics>=0.37.0" + "r-s4vectors>=0.27.12" + "r-iranges>=2.23.9" + "r-genomeinfodb>=1.15.2" + "r-xvector>=0.29.2" +) +optdepends=( + r-annotate + r-annotationdbi + r-annotationhub + r-biobase + r-biocstyle + "r-biostrings>=2.25.3" + r-bsgenome + r-bsgenome.hsapiens.ucsc.hg19 + r-bsgenome.mmusculus.ucsc.mm10 + r-bsgenome.scerevisiae.ucsc.saccer2 + r-deseq2 + r-dexseq + r-digest + r-edger + r-genomicalignments + r-genomicfeatures + r-gviz + r-hgu95av2.db + r-hgu95av2probe + r-kegggraph + r-keggrest + r-knitr + r-matrix + r-pasillabamsubset + r-rmarkdown + r-rnaseqdata.hnrnpc.bam.chr14 + "r-rsamtools>=1.13.53" + r-rtracklayer + r-runit + "r-summarizedexperiment>=0.1.5" + r-txdb.athaliana.biomart.plantsmart22 + r-txdb.dmelanogaster.ucsc.dm3.ensgene + r-txdb.hsapiens.ucsc.hg19.knowngene + r-txdb.mmusculus.ucsc.mm10.knowngene + r-variantannotation +) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz") -sha256sums=('9df774cd514343a29f57d45a13889bf400d0abeaa2013cd396f7faa6f911798c') +sha256sums=("d623d25b9eb20d4b48f42f6e30771101503b8e9e1592d76e310273ca54d81921") build() { R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}" @@ -21,6 +65,9 @@ build() { package() { install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library" + + if [[ -f "${_cranname}/LICENSE" ]]; then + install -Dm0644 "${_cranname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE" + fi } |