diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 6 |
1 files changed, 3 insertions, 3 deletions
@@ -2,7 +2,7 @@ # Contributor: Grey Christoforo <first name at last name dot net> _bcname=GenomicRanges -_bcver=1.38.0 +_bcver=1.39.3 pkgname=r-${_bcname,,} pkgver=${_bcver//[:-]/.} pkgrel=1 @@ -10,11 +10,11 @@ pkgdesc="Representation and manipulation of genomic intervals" arch=(i686 x86_64) url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html" license=(Artistic-2.0) -depends=('r>=2.10' 'r-biocgenerics>=0.25.3' 'r-s4vectors>=0.23.19' 'r-iranges>=2.19.9' 'r-genomeinfodb>=1.15.2' 'r-xvector>=0.19.8') +depends=('r>=2.10' 'r-biocgenerics>=0.25.3' 'r-s4vectors>=0.25.14' 'r-iranges>=2.21.6' 'r-genomeinfodb>=1.15.2' 'r-xvector>=0.27.2') makedepends=(gcc) optdepends=(r-biobase r-annotationdbi r-annotate r-biostrings r-summarizedexperiment r-rsamtools r-genomicalignments r-rtracklayer r-bsgenome r-genomicfeatures r-gviz r-variantannotation r-annotationhub r-deseq2 r-dexseq r-edger r-kegggraph r-rnaseqdata.hnrnpc.bam.chr14 r-pasillabamsubset r-kegg.db r-hgu95av2.db r-hgu95av2probe r-bsgenome.scerevisiae.ucsc.saccer2 r-bsgenome.hsapiens.ucsc.hg19 bsgenome.mmusculus.ucsc.mm10 r-txdb.athaliana.biomart.plantsmart22 txdb.dmelanogaster.ucsc.dm3.ensgene r-txdb.hsapiens.ucsc.hg19.knowngene r-txdb.mmusculus.ucsc.mm10.knowngene r-runit r-digest r-knitr r-biocstyle) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz") -md5sums=('1cee38e912a367f89297097a1cdbfdb2') +md5sums=('21b7e05689fa56405e3fd7e1db062e69') build() { cd "${srcdir}" |