diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 49 |
1 files changed, 34 insertions, 15 deletions
@@ -1,51 +1,70 @@ -# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> +# Contributor: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=GEOexplorer -_pkgver=1.6.0 +_pkgver=1.8.0 pkgname=r-${_pkgname,,} -pkgver=1.6.0 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='GEOexplorer: an R/Bioconductor package for gene expression analysis and visualisation' -arch=('any') +pkgdesc="GEOexplorer: a webserver for gene expression analysis and visualisation" +arch=(any) url="https://bioconductor.org/packages/${_pkgname}" -license=('GPL') +license=(GPL3) depends=( - r r-biobase + r-car r-dt + r-edger + r-enrichr r-factoextra r-geoquery r-ggplot2 r-heatmaply r-htmltools + r-httr r-impute + r-knitr r-limma - r-maptools + r-markdown r-pheatmap r-plotly + r-r.utils + r-readxl r-scales r-shiny - r-shinybs r-shinybusy + r-shinycssloaders r-shinyheatmaply r-stringr + r-sva r-umap + r-xfun + r-xml + r-xml2 +) +checkdepends=( + r-testthat ) optdepends=( - r-knitr r-rmarkdown r-testthat r-usethis ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('6a372671ce6db97ea6ae6ca3131484055aac9934115619df9ef8fa3fa02609b6') +md5sums=('213a1b499ce1d0640b267c8fb41e3204') +sha256sums=('fce2f86eb58a9ba5892e33f9d4c31d6b05a129c16096e2ba021d8ab6b0d412ca') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" } -# vim:set ts=2 sw=2 et: |