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Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 59 |
1 files changed, 59 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..e5c01bbea1bb --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,59 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> +# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com + +_pkgname=gpart +_pkgver=1.13.0 +pkgname=r-${_pkgname,,} +pkgver=1.13.0 +pkgrel=1 +pkgdesc='Human genome partitioning of dense sequencing data by identifying haplotype blocks' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('MIT') +depends=( + r + r-annotationdbi + r-biomart + r-data.table + r-genomicranges + r-homo.sapiens + r-igraph + r-iranges + r-organismdbi + r-rcpp + r-txdb.hsapiens.ucsc.hg38.knowngene +) +makedepends=( + patch +) +optdepends=( + r-biocstyle + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz" + "fix_pi.patch") +sha256sums=('4d8b149f072e10ad1ad149bf09325871cb08d740511bcaef9b4c08aea6e42894' + '033774f380e8c8edbe056b8dd2b076bcd408895a4ecaa75eb6da5e1c99caae70') + +prepare() { + cd "${srcdir}/${_pkgname}" + + # fix misspelled PI macro/variable + patch -Np0 -i "${srcdir}/fix_pi.patch" +} + +build() { + # create staging directory for installation + mkdir -p "${srcdir}/staged" + + R CMD INSTALL "${_pkgname}" -l "${srcdir}/staged" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${srcdir}/staged/${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |