diff options
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 59 |
1 files changed, 59 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..bccbfb5d9217 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,59 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=HiCDOC +_pkgver=1.4.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="A/B compartment detection and differential analysis" +arch=(x86_64) +url="https://bioconductor.org/packages/${_pkgname}" +license=(LGPL3) +depends=( + r-biocgenerics + r-biocparallel + r-cowplot + r-data.table + r-genomeinfodb + r-genomicranges + r-ggplot2 + r-gridextra + r-gtools + r-interactionset + r-multihiccompare + r-pbapply + r-rcpp + r-s4vectors + r-summarizedexperiment + r-zlibbioc + zlib +) +checkdepends=( + r-testthat +) +optdepends=( + r-biocmanager + r-biocstyle + r-knitr + r-rhdf5 + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('334df180a7e5e2851bbf6724e8537ffd') +sha256sums=('237724013ba999d39bc69394adc52b83bb29e9618b552bae00114aaa4653edf8') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |