diff options
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 53 |
1 files changed, 53 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..578632a9a7f3 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,53 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=HiCool +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="HiCool" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(MIT) +depends=( + r-basilisk + r-biocio + r-dplyr + r-genomicranges + r-hicexperiment + r-interactionset + r-iranges + r-plotly + r-reticulate + r-rmarkdown + r-rmdformats + r-s4vectors + r-sessioninfo + r-stringr + r-vroom +) +optdepends=( + r-annotationhub + r-biocfilecache + r-biocstyle + r-hicontacts + r-hicontactsdata + r-knitr + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('85a6824de7561e4879ae698959606ae3') +sha256sums=('d44d599c72556a83602fcdb85c1fca32a1d2b4e2b449bf14808697b5e2bd2283') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} |