diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 34 |
1 files changed, 23 insertions, 11 deletions
@@ -1,19 +1,31 @@ +# Maintainer: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com # Contributor: Grey Christoforo <first name at last name dot net> + +_bcname=IRanges +_bcver=2.20.2 pkgname=r-iranges -_bc_name=IRanges -pkgver=2.20.1 +pkgver=${_bcver//[:-]/.} pkgrel=1 -pkgdesc="Infrastructure for manipulating intervals on sequences" -url="https://bioconductor.org/packages/release/bioc/html/IRanges.html" -arch=("x86_64") +pkgdesc="Foundation of integer range manipulation in Bioconductor" +url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html" +arch=(i686 x86_64) license=('Artistic-2.0') -depends=('r' 'r-utils' 'r-biocgenerics' 'r-s4vectors') -source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bc_name}_${pkgver}.tar.gz") -sha1sums=('6cd7971d8e408836c090d87b1ddd94e0aca6a685') +depends=('r>=3.1.0' 'r-biocgenerics>=0.25.3' 'r-s4vectors>=0.23.22') +makedepends=('gcc') +optdepends=('r-xvector' 'r-genomicranges' 'r-rsamtools' 'r-genomicalignments' 'r-genomicfeatures' 'r-bsgenome.celegans.ucsc.ce2' 'r-pasillabamsubset' 'r-runit' 'r-biocstyle') +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz") +sha1sums=('43b6501d37212513cbc2bacc2ad348d3baa07ede') + +build(){ + cd "${srcdir}" + + R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l $srcdir +} package() { - mkdir -p $pkgdir/usr/lib/R/library - cd $srcdir + cd "${srcdir}" - R CMD INSTALL -l $pkgdir/usr/lib/R/library ./${_bc_name} + install -dm0755 "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "$_bcname" "$pkgdir/usr/lib/R/library" } + |