diff options
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 56 |
1 files changed, 56 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..03fb74e51333 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,56 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=karyoploteR +_pkgver=1.22.0 +pkgname=r-${_pkgname,,} +pkgver=1.22.0 +pkgrel=1 +pkgdesc='Plot customizable linear genomes displaying arbitrary data' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('Artistic2.0') +depends=( + r + r-annotationdbi + r-bamsignals + r-bezier + r-biovizbase + r-digest + r-genomeinfodb + r-genomicfeatures + r-genomicranges + r-iranges + r-memoise + r-regioner + r-rsamtools + r-rtracklayer + r-s4vectors + r-variantannotation +) +optdepends=( + r-biocstyle + r-bsgenome.hsapiens.ucsc.hg19 + r-bsgenome.hsapiens.ucsc.hg19.masked + r-knitr + r-magrittr + r-markdown + r-org.hs.eg.db + r-org.mm.eg.db + r-pasillabamsubset + r-rmarkdown + r-testthat + r-txdb.hsapiens.ucsc.hg19.knowngene + r-txdb.mmusculus.ucsc.mm10.knowngene +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('53db794dbad7df4560711dddd0f917023b1ea32bde49fb1aa37bc61179c25c41') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |