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Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 53 |
1 files changed, 53 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..2198f9ff9566 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,53 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=methrix +_pkgver=1.10.0 +pkgname=r-${_pkgname,,} +pkgver=1.10.0 +pkgrel=1 +pkgdesc='Fast and efficient summarization of generic bedGraph files from Bisufite sequencing' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('MIT') +depends=( + r + r-bsgenome + r-data.table + r-delayedarray + r-delayedmatrixstats + r-genomicranges + r-ggplot2 + r-hdf5array + r-iranges + r-matrixstats + r-rtracklayer + r-summarizedexperiment +) +optdepends=( + r-biostrings + r-bsgenome.mmusculus.ucsc.mm9 + r-bsseq + r-dss + r-genomeinfodb + r-genomicscores + r-knitr + r-mafdb.1kgenomes.phase3.grch38 + r-mafdb.1kgenomes.phase3.hs37d5 + r-plotly + r-rcolorbrewer + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('92d93bb3e273307cca204c00b8d18e7efa48d6cfe72206d69053f9b3bfba271c') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |