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Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 65 |
1 files changed, 65 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..9b8ca308ed82 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,65 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=minfi +_pkgver=1.42.0 +pkgname=r-${_pkgname,,} +pkgver=1.42.0 +pkgrel=1 +pkgdesc='Analyze Illumina Infinium DNA methylation arrays' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('Artistic2.0') +depends=( + r + r-beanplot + r-biobase + r-biocgenerics + r-biocparallel + r-biostrings + r-bumphunter + r-data.table + r-delayedarray + r-delayedmatrixstats + r-genefilter + r-genomeinfodb + r-genomicranges + r-geoquery + r-hdf5array + r-illuminaio + r-iranges + r-limma + r-mclust + r-nor1mix + r-preprocesscore + r-quadprog + r-rcolorbrewer + r-reshape + r-s4vectors + r-siggenes + r-summarizedexperiment +) +optdepends=( + r-biocstyle + r-digest + r-flowsorted.blood.450k + r-illuminahumanmethylation450kanno.ilmn12.hg19 + r-illuminahumanmethylation450kmanifest + r-knitr + r-minfidata + r-minfidataepic + r-rmarkdown + r-runit + r-tools +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('06e7596df31e8c01cd990f7f0dde3ef5e001cf58531ecb110f609658f8f9a508') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |