1 files changed, 73 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..56e900e56a46
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,73 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=Moonlight2R
+_pkgver=1.0.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Identify oncogenes and tumor suppressor genes from omics data"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-annotationhub
+  r-biobase
+  r-circlize
+  r-clusterprofiler
+  r-complexheatmap
+  r-doparallel
+  r-dose
+  r-dplyr
+  r-easypubmed
+  r-foreach
+  r-fuzzyjoin
+  r-genomicranges
+  r-geoquery
+  r-gplots
+  r-hiver
+  r-magrittr
+  r-org.hs.eg.db
+  r-parmigene
+  r-purrr
+  r-qpdf
+  r-randomforest
+  r-rcolorbrewer
+  r-readr
+  r-rismed
+  r-rtracklayer
+  r-seqminer
+  r-stringr
+  r-tibble
+  r-tidyheatmap
+  r-tidyr
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-devtools
+  r-knitr
+  r-png
+  r-rmarkdown
+  r-roxygen2
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('45af1bc580f9231cb2a83eae7517d3b8')
+sha256sums=('e306a3aa11700652a2f1ada4cec3eed4112ec43d3392da550538b8c4bf6ee909')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}