diff options
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..3abcb10fe85f --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,46 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=MsBackendMsp +_pkgver=1.6.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Mass Spectrometry Data Backend for NIST msp Files" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(Artistic2.0) +depends=( + r-biocparallel + r-iranges + r-mscoreutils + r-s4vectors + r-spectra +) +checkdepends=( + r-testthat +) +optdepends=( + r-biocstyle + r-knitr + r-rmarkdown + r-roxygen2 + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('805d831547106b2f232bb9eda75172bc') +sha256sums=('9e748bd8066416c0c2b9f8ba39cd3253ce755c0e45f6af6ae5eb095b9fa666fc') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |