diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 55 |
1 files changed, 55 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..8adb8ebaebd5 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,55 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=ngsReports +_pkgver=1.12.0 +pkgname=r-${_pkgname,,} +pkgver=1.12.0 +pkgrel=1 +pkgdesc='Load FastqQC reports and other NGS related files' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('custom') +depends=( + r + r-biocgenerics + r-biostrings + r-checkmate + r-dplyr + r-dt + r-forcats + r-ggdendro + r-ggplot2 + r-lifecycle + r-lubridate + r-pander + r-plotly + r-readr + r-reshape2 + r-rmarkdown + r-scales + r-stringr + r-tibble + r-tidyr + r-tidyselect + r-zoo +) +optdepends=( + r-biocstyle + r-cairo + r-knitr + r-testthat + r-truncnorm +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('d07bccaa02746c204037d2ca4bb145a8953ee57dd0a2cc04519ebcdf320f9d75') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |