diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 28 |
1 files changed, 16 insertions, 12 deletions
@@ -1,17 +1,17 @@ # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=ORFik -_pkgver=1.22.1 +_pkgver=1.24.0 pkgname=r-${_pkgname,,} -pkgver=1.22.1 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='Open Reading Frames in Genomics' -arch=('x86_64') -url="https://bioconductor.org/packages/${_pkgname}" +pkgdesc="Open Reading Frames in Genomics" +arch=(x86_64) +url="https://bioconductor.org/packages/$_pkgname" license=('MIT') depends=( - r r-annotationdbi + r-biocfilecache r-biocgenerics r-biocparallel r-biomart @@ -40,6 +40,7 @@ depends=( r-rtracklayer r-s4vectors r-summarizedexperiment + r-txdbmaker r-withr r-xml r-xml2 @@ -52,15 +53,18 @@ optdepends=( r-testthat ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('0eb523aed68ca13c42c5f55b3fff3ac18618aeea1bbe648ed7eb2a5fc37a48b2') +md5sums=('b0f07c686b2a4f5688ef8e4bc86ba8d4') +b2sums=('b4cf62fe20bc03be19a4b1536fefc8c93bdbedae13bbad32c8857b782dea51e51d4ad845aa27ac2457ac58a3da813f440d956787bb1325ceeba4e5a0e7a19eb0') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir build + R CMD INSTALL -l build "$_pkgname" } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" - install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" } -# vim:set ts=2 sw=2 et: |