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Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 58 |
1 files changed, 58 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..ef7ed9f1e7c6 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,58 @@ +# system requirements: C++11 +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=PCAtools +_pkgver=2.8.0 +pkgname=r-${_pkgname,,} +pkgver=2.8.0 +pkgrel=1 +pkgdesc='PCAtools: Everything Principal Components Analysis' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-beachmat + r-bh + r-biocparallel + r-biocsingular + r-cowplot + r-delayedarray + r-delayedmatrixstats + r-dqrng + r-ggplot2 + r-ggrepel + r-rcpp + r-reshape2 + gcc +) +optdepends=( + r-airway + r-beachmat + r-biobase + r-biocgenerics + r-deseq2 + r-geoquery + r-ggalt + r-ggplotify + r-hgu133a.db + r-knitr + r-magrittr + r-org.hs.eg.db + r-rmarkdown + r-rmtstat + r-scran + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('db88ee276d212e29484dec6fefa571c35c91106056fdcb7216da3b04006c440f') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |