diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..bcdbac4373b2 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,50 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=preciseTAD +_pkgver=1.6.0 +pkgname=r-${_pkgname,,} +pkgver=1.6.0 +pkgrel=1 +pkgdesc='preciseTAD: A machine learning framework for precise TAD boundary prediction' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('MIT') +depends=( + r + r-caret + r-dbscan + r-dosnow + r-e1071 + r-foreach + r-genomicranges + r-gtools + r-iranges + r-modelmetrics + r-pbapply + r-proc + r-prroc + r-randomforest + r-rcgh + r-s4vectors +) +optdepends=( + r-bioccheck + r-biocmanager + r-biocstyle + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('0f9eea2686ee6b6e6b64303e0f73e14b369e6c384b0ccdb579cd79628607497e') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |