diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 43 |
1 files changed, 27 insertions, 16 deletions
@@ -2,31 +2,42 @@ # Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com # Contributor: Grey Christoforo <first name at last name dot net> + _bcname=Rhtslib -_bcver=1.28.0 +_bcver=2.0.0 pkgname=r-${_bcname,,} -pkgver=${_bcver//[:-]/.} -pkgrel=1 pkgdesc="HTSlib high-throughput sequencing library as an R package" -arch=(i686 x86_64) url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html" -license=(LGPL2) -depends=(r r-zlibbioc bzip2 xz curl) -makedepends=(make) -optdepends=(r-knitr r-rmarkdown r-biocstyle) +license=("LGPL2.1") +pkgver=${_bcver//[:-]/.} +pkgrel=1 + +arch=("i686" "x86_64") +depends=( + "r" + "r-zlibbioc" +) +optdepends=( + "r-knitr" + "r-markdown" + "r-biocstyle" +) +makedepends=() + source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz") -sha256sums=('4e48c8643e5d3429238ee76faa4c68ed8a7028e7f594c109ee75f5e994d17c1e') -options=(!lto staticlibs) +b2sums=('a12733e6d900552b20e8ac9e6bb95d63146ab35dc41bf5e31357795891882333689ca4b8ad94e1007a7c5893c3757c4fb41f0384815c9964d9826b0e2a013bb7') + +options=("!lto" "staticlibs") build() { - R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}" + R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}" } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library" + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library" - if [[ -f "${_cranname}/LICENSE" ]]; then - install -Dm0644 "${_cranname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE" - fi + if [[ -f "${_bcname}/LICENSE" ]]; then + install -Dm0644 "${_bcname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE" + fi } |