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-rw-r--r--PKGBUILD22
1 files changed, 8 insertions, 14 deletions
diff --git a/PKGBUILD b/PKGBUILD
index ce3a11d89fdd..05a625dd2093 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,24 +1,26 @@
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=rtracklayer
-_pkgver=1.62.0
+_pkgver=1.64.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
-pkgrel=2
+pkgrel=1
pkgdesc="R interface to genome annotation files and the UCSC genome browser"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0 AND LicenseRef-rtracklayer')
depends=(
+ curl
openssl
r-biocgenerics
r-biocio
r-biostrings
+ r-curl
r-genomeinfodb
r-genomicalignments
r-genomicranges
+ r-httr
r-iranges
- r-rcurl
r-restfulr
r-rsamtools
r-s4vectors
@@ -40,17 +42,9 @@ optdepends=(
r-runit
r-txdb.hsapiens.ucsc.hg19.knowngene
)
-source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
- "$_pkgname-fix-format.patch::https://github.com/lawremi/rtracklayer/commit/86407bbef2d02455053b7b7c96afe9c5ce6949e7.patch")
-md5sums=('a16a9ca02e49808b38823899860abdb6'
- '21d1f10d3fc8764eda00651f1318e119')
-b2sums=('720a430ebeefa578905ab1e2ab20f6e17c7d58c2e4cff98313ba78dbbb81132c7f05632894ca57e8f65f553bedd8253d45f7a571a8cf2d6c8f96da7cba6ba917'
- '93a6ea0626d428a2ef43ec110c526057b1fcc80925e150f4d0d10846c534eb508c11b265e5fa6cd60a16a91665a58ac204cceefb8ae9c41bf2f03f6b02b2544b')
-
-prepare() {
- # fix format string errors
- patch -Np1 -d "$_pkgname" < "$_pkgname-fix-format.patch"
-}
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('244c1ee304157345abf9c0fd4dbb826f')
+b2sums=('25d59d580d0f110997623189349b02e843500161dccdf0fff8af65b68f0b7578e5611fc407829e7bc3adc6395974d3c7a02f09edffcc73cdf2a3050fb5f80c23')
build() {
mkdir build