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Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 55 |
1 files changed, 55 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..539a3668221d --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,55 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=scider +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Spatial cell-type inter-correlation by density in R" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(GPL3) +depends=( + r-ggplot2 + r-igraph + r-isoband + r-janitor + r-knitr + r-lwgeom + r-pheatmap + r-plotly + r-rlang + r-s4vectors + r-sf + r-shiny + r-spatialexperiment + r-spatstat.explore + r-spatstat.geom + r-summarizedexperiment +) +checkdepends=( + r-edger + r-testthat +) +optdepends=( + r-edger + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('d20e0e846be7368da2613650b3834957') +sha256sums=('0b54660caa2f18fa624319f51f8971d29e067b56546f4bfd50cfb4dd5f8187e6') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |