1 files changed, 62 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..c30dc6439e1c
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,62 @@
+# system requirements: C++11, GNU make
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=scPipe
+_pkgver=1.18.0
+pkgname=r-${_pkgname,,}
+pkgver=1.18.0
+pkgrel=1
+pkgdesc='pipeline for single cell RNA-seq data analysis'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-annotationdbi
+  r-biocgenerics
+  r-biomart
+  r-dplyr
+  r-genomicranges
+  r-ggally
+  r-ggplot2
+  r-glue
+  r-hash
+  r-magrittr
+  r-mclust
+  r-org.hs.eg.db
+  r-org.mm.eg.db
+  r-rcpp
+  r-reshape
+  r-rhtslib
+  r-rlang
+  r-robustbase
+  r-rtracklayer
+  r-s4vectors
+  r-scales
+  r-scater
+  r-singlecellexperiment
+  r-stringr
+  r-summarizedexperiment
+  r-testthat
+  r-zlibbioc
+  gcc
+  make
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+  r-rsubread
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a9c7c5a34ae3fbe5ecb8b60b5e8da22a28800f96a7c273f5c388a5bbf0a88a8f')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: