1 files changed, 60 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..6ca97f9ff32d
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,60 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=seqArchRplus
+_pkgver=1.2.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Downstream analyses of promoter sequence architectures and HTML report generation"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-biocparallel
+  r-biostrings
+  r-bsgenome
+  r-chipseeker
+  r-cli
+  r-clusterprofiler
+  r-cowplot
+  r-factoextra
+  r-genomeinfodb
+  r-genomicranges
+  r-ggimage
+  r-ggplot2
+  r-gridextra
+  r-heatmaps
+  r-iranges
+  r-magick
+  r-rcolorbrewer
+  r-s4vectors
+  r-scales
+  r-seqarchr
+  r-seqpattern
+)
+optdepends=(
+  r-biocstyle
+  r-bsgenome.dmelanogaster.ucsc.dm6
+  r-cager
+  r-covr
+  r-knitr
+  r-org.dm.eg.db
+  r-pdftools
+  r-rmarkdown
+  r-slickr
+  r-txdb.dmelanogaster.ucsc.dm6.ensgene
+  r-xfun
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('9f20e2eed3e5b5a498564ea201b251d9')
+sha256sums=('afc12881d75029dab06b8cfb7a89b014d397f5dba3aa9cc89ae26b75ce330e48')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}