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Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 58 |
1 files changed, 58 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..6bf7d3a0e974 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,58 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=SIAMCAT +_pkgver=2.0.0 +pkgname=r-${_pkgname,,} +pkgver=2.0.0 +pkgrel=1 +pkgdesc='Statistical Inference of Associations between Microbial Communities And host phenoTypes' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-beanplot + r-corrplot + r-glmnet + r-gridbase + r-gridextra + r-infotheo + r-liblinear + r-matrixstats + r-mlr + r-paramhelpers + r-phyloseq + r-proc + r-progress + r-prroc + r-rcolorbrewer + r-scales + r-stringr + r-mlr3 + r-lmertest + r-mlr3learners + r-mlr3tuning + r-paradox + r-lgr +) +optdepends=( + r-biocstyle + r-ggpubr + r-knitr + r-optparse + r-rmarkdown + r-testthat + r-tidyverse +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('6e8c33a7e95e1f80741d69434c90eab9e84e6f4e28fb0a17f530d28421d36f81') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |