diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 26 |
1 files changed, 14 insertions, 12 deletions
@@ -1,16 +1,15 @@ # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=SPLINTER -_pkgver=1.28.0 +_pkgver=1.30.0 pkgname=r-${_pkgname,,} -pkgver=1.28.0 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='Splice Interpreter of Transcripts' -arch=('any') -url="https://bioconductor.org/packages/${_pkgname}" -license=('GPL') +pkgdesc="Splice Interpreter of Transcripts" +arch=(any) +url="https://bioconductor.org/packages/$_pkgname" +license=('GPL-2.0-only') depends=( - r r-biomart r-biostrings r-bsgenome.mmusculus.ucsc.mm9 @@ -23,6 +22,7 @@ depends=( r-gviz r-iranges r-plyr + r-pwalign r-s4vectors r-seqlogo r-stringr @@ -31,16 +31,18 @@ optdepends=( r-biocstyle r-knitr r-rmarkdown + r-txdbmaker ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('fd07c672a2f7e33178b29fac2c368bcd9e91c33d0c1737571233ab2569c09eda') +md5sums=('0cdd3a76c6ad50647a891c96d0bfb12c') +b2sums=('f65555b9aaadbe536485720bfa1cc4f43a9b13229d1fd6a105fa216bd4b4c1024661fc1a29880aa0efd9a9dcb5acfb20044df471255633669b830270f01a012f') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir build + R CMD INSTALL -l build "$_pkgname" } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" } -# vim:set ts=2 sw=2 et: |