1 files changed, 62 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..e760277ca04e
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,62 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=VariantFiltering
+_pkgver=1.32.0
+pkgname=r-${_pkgname,,}
+pkgver=1.32.0
+pkgrel=1
+pkgdesc='Filtering of coding and non-coding genetic variants'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-annotationdbi
+  r-biobase
+  r-biocgenerics
+  r-biocparallel
+  r-biostrings
+  r-bsgenome
+  r-dt
+  r-genomeinfodb
+  r-genomicfeatures
+  r-genomicranges
+  r-genomicscores
+  r-graph
+  r-gviz
+  r-iranges
+  r-rbgl
+  r-rsamtools
+  r-s4vectors
+  r-shiny
+  r-shinyjs
+  r-shinythemes
+  r-shinytree
+  r-summarizedexperiment
+  r-variantannotation
+  r-xvector
+)
+optdepends=(
+  r-biocstyle
+  r-bsgenome.hsapiens.1000genomes.hs37d5
+  r-mafdb.1kgenomes.phase1.hs37d5
+  r-org.hs.eg.db
+  r-phastcons100way.ucsc.hg19
+  r-polyphen.hsapiens.dbsnp131
+  r-runit
+  r-sift.hsapiens.dbsnp137
+  r-snplocs.hsapiens.dbsnp144.grch37
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('68f6c040bbc4243d099cac3373398cb1907dd04da9bd8d17e841881931b258ae')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: