diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..0c749a4589df --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,47 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=wateRmelon +_pkgver=2.2.0 +pkgname=r-${_pkgname,,} +pkgver=2.2.0 +pkgrel=1 +pkgdesc='Illumina 450 and EPIC methylation array normalization and metrics' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biobase + r-illuminahumanmethylation450kanno.ilmn12.hg19 + r-illuminaio + r-limma + r-lumi + r-matrixstats + r-methylumi + r-roc +) +optdepends=( + r-biocstyle + r-flowsorted.blood.450k + r-flowsorted.blood.epic + r-illuminahumanmethylationepicanno.ilm10b2.hg19 + r-illuminahumanmethylationepicmanifest + r-irlba + r-knitr + r-minfi + r-preprocesscore + r-rmarkdown + r-rpmm +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('fb92984b6eafe8bc56849e1520961749dec7285e195c5e8754ccedbc94f3b829') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |