1 files changed, 54 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..b15cf99e9888
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,54 @@
+# Maintainer: Ronny Lorenz <ronny at tbi dot univie dot ac dot at>
+
+pkgname=rnamicro
+pkgver=1.1.4
+pkgrel=1
+pkgdesc="Distinguish miRNA precursor sequences from other (putative) non-coding RNAs"
+arch=('x86_64' 'i686')
+license=('Custom')
+url="http://www.tbi.univie.ac.at/~jana/software/RNAmicro.html"
+depends=('pcre')
+optdepends=()
+makedepends=()
+provides=()
+source=(http://www.bioinf.uni-leipzig.de/~jana/downloads/RNAmicro${pkgver}.tar
+        buildfix.patch)
+md5sums=( '85890a3731b39fd4f66a8368f2288491'
+          'e68fd817f27938c4e11a1565d0c2ad59')
+
+prepare() {
+  cd "${srcdir}/RNAmicro${pkgver}"
+
+  # remove shipped binaries
+  rm -f RNAmicro svm.o
+
+  # patch sources to build correctly and include newer version of libsvm
+  patch -p1 < ../buildfix.patch
+}
+
+build() {
+  cd "${srcdir}/RNAmicro${pkgver}"
+  make || return 1
+}
+
+package() {
+  cd "${srcdir}/RNAmicro${pkgver}"
+  install -Dm755 RNAmicro "${pkgdir}/usr/bin/RNAmicro"
+
+  # install example files
+  for aln in examples/*.aln
+  do
+    install -Dm644 ${aln} "${pkgdir}/usr/share/${pkgname}/${aln}"
+  done
+
+  # install models
+  for aln in models/*.model
+  do
+    install -Dm644 ${aln} "${pkgdir}/usr/share/${pkgname}/${aln}"
+  done
+
+  # install documentation
+  install -Dm644 doku/shortDocu.pdf "${pkgdir}/usr/share/doc/${pkgname}/shortDocu.pdf"
+
+}
+