diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 17 |
1 files changed, 11 insertions, 6 deletions
@@ -1,16 +1,16 @@ # Maintainer: bipin kumar <bipin@ccmb.res.in> pkgname=salmon pkgver=1.9.0 -pkgrel=1 +pkgrel=2 pkgdesc="Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments" arch=('x86_64') url="https://combine-lab.github.io/$pkgname/" -license=('GPL v3.0') -depends=('bzip2' 'intel-tbb' 'xz') -makedepends=('boost>=1.55' 'cmake' 'unzip') +license=('GPL') +depends=('intel-tbb' 'jemalloc' 'boost-libs' 'bzip2') +makedepends=('boost>=1.55' 'cmake' 'unzip' 'cereal') options=('!emptydirs') source=("$pkgname-$pkgver.tar.gz"::"https://github.com/COMBINE-lab/$pkgname/archive/v$pkgver.tar.gz") -md5sums=('8bdb73fbda5209953d6c480a67f52a9f') +sha256sums=('450d953a5c43fe63fd745733f478d3fbaf24d926cb52731fd38ee21c4990d613') prepare() { cd "$pkgname-$pkgver" @@ -20,7 +20,6 @@ prepare() { } build() { - cd "$pkgname-$pkgver" # FIXME: NO_IPO=TRUE is for some reason needed in 1.3.0 @@ -31,6 +30,7 @@ build() { -DCMAKE_COLOR_MAKEFILE:BOOL='ON' \ -DCMAKE_INSTALL_PREFIX:PATH='/usr' \ -Wno-dev \ + -DUSE_SHARED_LIBS=ON \ . make @@ -39,6 +39,11 @@ build() { package() { cd "$pkgname-$pkgver" make DESTDIR="$pkgdir" install + + install -Dm644 include/{*.h,*.hpp,*.tpp} -t ${pkgdir}/usr/include/${pkgname} + + # clear cmake files + rm -rf ${pkgdir}/usr/lib/{graphdump,ntcard,twopaco} } # Local Variables: |