diff options
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 13 |
1 files changed, 10 insertions, 3 deletions
@@ -3,13 +3,13 @@ # Contributor: Thiago L. A. Miller <thiago_leisrael@hotmail.com> pkgname=salmon pkgver=1.10.2 -pkgrel=1 +pkgrel=3 pkgdesc="Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments" arch=('x86_64') url="https://combine-lab.github.io/$pkgname/" license=('GPL3') -depends=('intel-tbb' 'jemalloc' 'boost-libs') -makedepends=('boost>=1.55' 'cmake' 'unzip' 'cereal' 'curl' 'bzip2') +depends=('intel-tbb' 'bzip2' 'jemalloc' 'boost-libs' 'gcc-libs' 'xz' 'zlib' 'glibc') +makedepends=('boost>=1.55' 'cmake' 'unzip' 'cereal' 'curl' 'bzip2' 'python-sphinx') options=('!emptydirs') source=("$pkgname-$pkgver.tar.gz"::"https://github.com/COMBINE-lab/$pkgname/archive/v$pkgver.tar.gz") sha256sums=('976989182160fef3afb4429ee8b85d8dd39ed6ca212bb14d6a65cde0e985fb98') @@ -38,6 +38,9 @@ build() { -DUSE_SHARED_LIBS=ON cmake --build build + # build manpages + cd doc + make man } check() { @@ -54,6 +57,10 @@ package() { install -Dm644 include/{*.h,*.hpp,*.tpp} -t ${pkgdir}/usr/include/${pkgname} + #install manpages + install -d ${pkgdir}/usr/share/man/man1/ + install -Dm644 doc/build/man/salmon.1 ${pkgdir}/usr/share/man/man1/salmon.1 + # clear cmake files rm -rf ${pkgdir}/usr/lib/{graphdump,ntcard,twopaco} } |