diff options
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 16 |
1 files changed, 11 insertions, 5 deletions
@@ -1,7 +1,7 @@ # Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com> pkgname=sga -pkgver=0.10.13 +pkgver=0.10.14 pkgrel=1 pkgdesc="de novo sequence assembler using string graphs" arch=('x86_64' 'i686') @@ -10,20 +10,26 @@ license=('GPL3') depends=('bamtools' 'jemalloc' 'python') makedepends=('sparsehash') source=("$pkgname-$pkgver.tar.gz::https://github.com/jts/sga/archive/v$pkgver.tar.gz" + 'set-standard.patch' 'configure-rpath.patch') -md5sums=('d4f6aefc48c940dba96cc6513649ecdd' +md5sums=('211edb372898d6515dcde98d17078b7b' + 'SKIP' 'SKIP') prepare() { - cd $srcdir/$pkgname-$pkgver/src + cd $srcdir/$pkgname-$pkgver + + patch -p1 -i $srcdir/set-standard.patch + patch -p1 -i $srcdir/configure-rpath.patch + + cd src - patch -p0 -i $srcdir/configure-rpath.patch + ./autogen.sh } build() { cd $srcdir/$pkgname-$pkgver/src - ./autogen.sh ./configure --prefix=/usr --with-bamtools=/usr --with-jemalloc=/usr make |